miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|238101514|gb|GO978326.1|GO978326 GACGGTCTTACCGGGAGGAGTGGAATAAGGTTAGATTGGATGAGACGGCTTCGAATAGCACTCGGTGCAGCGAGAGGGGT
GCAATATCTGCATGACTTAGCCAATCCTCCGATAATTCACAGAGATATTAAATCGAACAATATCTTGCTGGACGAACGGT
TGAATGCAAAAGTAGCAGATTTCGGTCTTTCTAAGCCTATGGGAGAACCCGAAAAGGGCTATGTTACCACTCAAGTTAAA
GGCACAATGGGATATTTGGATCCCGAGTACTACATGACAAACCAGTTGACGGAAAAGAGCGACGTATACAGCTTCGGAGT
TCTTCTATTCGAGATTTTAACCGCAAGAAGTCCAATAGTTAACGGTAAGTACATCGTTCGAGAAGTCAAAGAAGCAATGG
ACAGAACCAAGGTTCTCTACAACCTCCACGACATCCTCGACCCAATAGTAGCCGCCAACTCAGCACCAGGCAGCGTCGAA
AAGTTTGCTGACTTGGCGCTGAGGTGTGTCCAAGAATCGGGCGATAGCAGGCCCACGATGAATGAGGTGGCGAAGGAGAT
CGAAAACATCATGGAATCGGCCGGTCTCAATCCACACGCTGAGTCAGCATCGACTTCGACAG




Most similar to sp|Q9LT96|Y5977_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9LT96|Y5977_ARATH Probable leucine-rich repeat_field receptor-like
            protein kinase At5g49770 OS=Arabidopsis thaliana
            GN=At5g49770 PE=2 SV=1
          Length = 946

 Score =  254 bits (650), Expect = 2e-67
 Identities = 121/205 (59%), Positives = 160/205 (78%), Gaps = 1/205 (0%)
 Frame = +1

Query: 1    DGLTGRSGIRLDWMXXXXXXXXXXXXVQYLHDLANPPIIHRDIKSNNILLDERLNAKVAD 180
            DGL+G++G++LDW             + YLH+LA+PPIIHRD+KSNNILLDE L AKVAD
Sbjct: 717  DGLSGKNGVKLDWTRRLKIALGSGKGLAYLHELADPPIIHRDVKSNNILLDEHLTAKVAD 776

Query: 181  FGLSKPMGEPEKGYVTTQVKGTMGYLDPEYYMTNQLTEKSDVYSFGVLLFEILTARSPIV 360
            FGLSK +G+PEK +VTTQVKGTMGYLDPEYYMTNQLTEKSDVY FGV++ E+LT +SPI 
Sbjct: 777  FGLSKLVGDPEKAHVTTQVKGTMGYLDPEYYMTNQLTEKSDVYGFGVVMLELLTGKSPID 836

Query: 361  NGKYIVREVKEAMDRTKVLYNLHDILDPIVAANSAP-GSVEKFADLALRCVQESGDSRPT 537
             G Y+V+EVK+ MD+++ LY+L ++LD  +  NS      EK+ D+AL+CV+  G +RPT
Sbjct: 837  RGSYVVKEVKKKMDKSRNLYDLQELLDTTIIQNSGNLKGFEKYVDVALQCVEPEGVNRPT 896

Query: 538  MNEVAKEIENIMESAGLNPHAESAS 612
            M+EV +E+E+I+   GLNP+A+SA+
Sbjct: 897  MSEVVQELESILRLVGLNPNADSAT 921